{"id":10555,"date":"2016-09-26T09:14:08","date_gmt":"2016-09-26T08:14:08","guid":{"rendered":"http:\/\/k2info.w.uib.no\/?p=10555"},"modified":"2016-09-30T11:56:15","modified_gmt":"2016-09-30T10:56:15","slug":"nye-publikasjoner-103","status":"publish","type":"post","link":"https:\/\/k2info.w.uib.no\/en\/2016\/09\/26\/nye-publikasjoner-103\/","title":{"rendered":"[:no]Nye publikasjoner[:en]New pulications[:]"},"content":{"rendered":"

[:no]Basert p\u00e5\u00a0siste ukes\u00a0s\u00f8k p\u00e5 \u201cDepartment of Clinical Science AND Bergen\u201d. Hvis du har publikasjoner som ikke favnes av dette s\u00f8ket, send referansen til irene.hjelmaas@uib.no<\/p>\n

<\/p>\n

Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration.<\/a> Smid M, Rodr\u00edguez-Gonz\u00e1lez FG, Sieuwerts AM, Salgado R, Prager-Van der Smissen WJ, Vlugt-Daane MV, van Galen A, Nik-Zainal S, Staaf J, Brinkman AB, van de Vijver MJ, Richardson AL, Fatima A, Berentsen K, Butler A, Martin S, Davies HR, Debets R, Gelder ME, van Deurzen CH, MacGrogan G, Van den Eynden GG, Purdie C, Thompson AM, Caldas C, Span PN, Simpson PT, Lakhani SR, Van Laere S, Desmedt C, Ringn\u00e9r M, Tommasi S, Eyford J, Broeks A, Vincent-Salomon A, Futreal PA, Knappskog S, King T, Thomas G, Viari A, Langer\u00f8d A, B\u00f8rresen-Dale AL, Birney E, Stunnenberg HG, Stratton M, Foekens JA, Martens JW. Nat Commun. 2016 Sep 26;7:12910. doi: 10.1038\/ncomms12910. PMID: 27666519 [PubMed – as supplied by publisher]<\/p>\n

Differences in miRNA and mRNA Profile of Papillary Thyroid Cancer Variants.
\n<\/a>Stokowy T, Gawel D, Wojtas B. \u00a0 Int J Endocrinol. 2016;2016:1427042. doi: 10.1155\/2016\/1427042. Epub 2016 Aug 30. \u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 PMID: 27656207 [PubMed] Free PMC Article<\/p>\n

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.<\/a> Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, Renaud G, Erlich Y, Willems T, Gallo C, Spence JP, Song YS, Poletti G, Balloux F, van Driem G, de Knijff P, Romero IG, Jha AR, Behar DM, Bravi CM, Capelli C, Hervig T, Moreno-Estrada A, Posukh OL, Balanovska E, Balanovsky O, Karachanak-Yankova S, Sahakyan H, Toncheva D, Yepiskoposyan L, Tyler-Smith C, Xue Y, Abdullah MS, Ruiz-Linares A, Beall CM, Di Rienzo A, Jeong C, Starikovskaya EB, Metspalu E, Parik J, Villems R, Henn BM, Hodoglugil U, Mahley R, Sajantila A, Stamatoyannopoulos G, Wee JT, Khusainova R, Khusnutdinova E, Litvinov S, Ayodo G, Comas D, Hammer MF, Kivisild T, Klitz W, Winkler CA, Labuda D, Bamshad M, Jorde LB, Tishkoff SA, Watkins WS, Metspalu M, Dryomov S, Sukernik R, Singh L, Thangaraj K, P\u00e4\u00e4bo S, Kelso J, Patterson N, Reich D. Nature. 2016 Sep 21. doi: 10.1038\/nature18964. [Epub ahead of print] \u00a0\u00a0\u00a0\u00a0 PMID: 27654912 [PubMed – as supplied by publisher]<\/p>\n

Sensitivity of Next-Generation Sequencing Metagenomic Analysis for Detection of RNA and DNA Viruses in Cerebrospinal Fluid: The Confounding Effect of Background Contamination.<\/a> Bukowska-O\u015bko I, Perlejewski K, Nakamura S, Motooka D, Stokowy T, Kosi\u0144ska J, Popiel M, P\u0142oski R, Horban A, Lipowski D, Caraballo Cort\u00e9s K, Pawe\u0142czyk A, Demkow U, St\u0119pie\u0144 A, Radkowski M, Laskus T. Adv Exp Med Biol. 2016 Sep 20. [Epub ahead of print] PMID: 27645539 [PubMed – as supplied by publisher]<\/p>\n

Use of probiotics and prebiotics in infant feeding.
\n<\/a>Bertelsen RJ, Jensen ET, Ringel-Kulka T. Best Pract Res Clin Gastroenterol. 2016 Feb;30(1):39-48. doi: 10.1016\/j.bpg.2016.01.001. Epub 2016 Jan 22. Review. \u00a0 PMID: 27048895 [PubMed – indexed for MEDLINE]<\/p>\n

Co-transplantation of multipotent mesenchymal stromal cells in allogeneic hematopoietic stem cell transplantation: A systematic review and meta-analysis.<\/a> Kallekleiv M, Larun L, Bruserud \u00d8, Hatfield KJ. \u00a0\u00a0\u00a0\u00a0 Cytotherapy. 2016 Feb;18(2):172-85. doi: 10.1016\/j.jcyt.2015.11.010. Review. \u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 PMID: 26794711 [PubMed – indexed for MEDLINE]<\/p>\n

Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs.<\/a> Nepal C, Coolen M, Hadzhiev Y, Cussigh D, Mydel P, Steen VM, Carninci P, Andersen JB, Bally-Cuif L, M\u00fcller F, Lenhard B. Nucleic Acids Res. 2016 Apr 20;44(7):3070-81. doi: 10.1093\/nar\/gkv1354. Epub 2015 Dec 15. \u00a0\u00a0\u00a0\u00a0 PMID: 26673698 [PubMed – indexed for MEDLINE] Free PMC Article<\/p>\n

Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.<\/a> Cheng TH, Thompson D, Painter J, O’Mara T, Gorman M, Martin L, Palles C, Jones A, Buchanan DD, Ko Win A, Hopper J, Jenkins M, Lindor NM, Newcomb PA, Gallinger S, Conti D, Schumacher F, Casey G, Giles GG, Pharoah P, Peto J, Cox A, Swerdlow A, Couch F, Cunningham JM, Goode EL, Winham SJ, Lambrechts D, Fasching P, Burwinkel B, Brenner H, Brauch H, Chang-Claude J, Salvesen HB, Kristensen V, Darabi H, Li J, Liu T, Lindblom A, Hall P, de Polanco ME, Sans M, Carracedo A, Castellvi-Bel S, Rojas-Martinez A, Aguiar Jnr S, Teixeira MR, Dunning AM, Dennis J, Otton G, Proietto T, Holliday E, Attia J, Ashton K, Scott RJ, McEvoy M, Dowdy SC, Fridley BL, Werner HM, Trovik J, Njolstad TS, Tham E, Mints M, Runnebaum I, Hillemanns P, D\u00f6rk T, Amant F, Schrauwen S, Hein A, Beckmann MW, Ekici A, Czene K, Meindl A, Bolla MK, Michailidou K, Tyrer JP, Wang Q, Ahmed S, Healey CS, Shah M, Annibali D, Depreeuw J, Al-Tassan NA, Harris R, Meyer BF, Whiffin N, Hosking FJ, Kinnersley B, Farrington SM, Timofeeva M, Tenesa A, Campbell H, Haile RW, Hodgson S, Carvajal-Carmona L, Cheadle JP, Easton D, Dunlop M, Houlston R, Spurdle A, Tomlinson I. \u00a0\u00a0\u00a0 Sci Rep. 2015 Dec 1;5:17369. doi: 0.1038\/srep17369. PMID: 26621817 [PubMed – indexed for MEDLINE] Free PMC Article<\/p>\n

Increased cytotoxicity and streptolysin O activity in group G streptococcal strains causing invasive tissue infections.<\/a>\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Siemens N, Kittang BR, Chakrakodi B, Oppegaard O, Johansson L, Bruun T, Mylvaganam H; INFECT Study Group, Svensson M, Skrede S, Norrby-Teglund A. Sci Rep. 2015 Nov 25;5:16945. doi: 10.1038\/srep16945.\u00a0 PMID: 26601609 [PubMed – indexed for MEDLINE] Free PMC Article<\/p>\n

The hazard of sharp force injuries: Factors influencing outcome.<\/a> Kristoffersen S, Normann SA, Morild I, Lilleng PK, Heltne JK. J Forensic Leg Med. 2016 Jan;37:71-7. doi: 10.1016\/j.jflm.2015.10.005. Epub 2015 Nov 5. PMID: 26599374 [PubMed – indexed for MEDLINE]<\/p>\n

Tumor necrosis is an important hallmark of aggressive endometrial cancer and associates with hypoxia, angiogenesis and inflammation responses.<\/a><\/p>\n

Bredholt G, Mannelqvist M, Stefansson IM, Birkeland E, B\u00f8 TH, \u00d8yan AM, Trovik J, Kalland KH, Jonassen I, Salvesen HB, Wik E, Akslen LA. Oncotarget. 2015 Nov 24;6(37):39676-91. doi: 10.18632\/oncotarget.5344. PMID: 26485755 [PubMed – indexed for MEDLINE] Free PMC Article<\/p>\n

Improving genome annotation of enterotoxigenic Escherichia coli TW10598 by a label-free quantitative MS\/MS approach.<\/a> Pettersen VK, Steinsland H, Wiker HG. \u00a0\u00a0\u00a0 Proteomics. 2015 Nov;15(22):3826-34. doi: 10.1002\/pmic.201500278. Epub 2015 Oct 7. PMID: 26349841 [PubMed – indexed for MEDLINE][:en]Based on last week\u2019s search for \u201cDepartment of Clinical Science AND Bergen\u201d. If you have publications which are not covered by this search, send the reference to irene.hjelmaas@uib.no.<\/p>\n

<\/p>\n

Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration.<\/span><\/a> Smid M, Rodr\u00edguez-Gonz\u00e1lez FG, Sieuwerts AM, Salgado R, Prager-Van der Smissen WJ, Vlugt-Daane MV, van Galen A, Nik-Zainal S, Staaf J, Brinkman AB, van de Vijver MJ, Richardson AL, Fatima A, Berentsen K, Butler A, Martin S, Davies HR, Debets R, Gelder ME, van Deurzen CH, MacGrogan G, Van den Eynden GG, Purdie C, Thompson AM, Caldas C, Span PN, Simpson PT, Lakhani SR, Van Laere S, Desmedt C, Ringn\u00e9r M, Tommasi S, Eyford J, Broeks A, Vincent-Salomon A, Futreal PA, Knappskog S, King T, Thomas G, Viari A, Langer\u00f8d A, B\u00f8rresen-Dale AL, Birney E, Stunnenberg HG, Stratton M, Foekens JA, Martens JW. Nat Commun. 2016 Sep 26;7:12910. doi: 10.1038\/ncomms12910. PMID: 27666519 [PubMed – as supplied by publisher]<\/p>\n

Differences in miRNA and mRNA Profile of Papillary Thyroid Cancer Variants.
\n<\/span><\/a>Stokowy T, Gawel D, Wojtas B. \u00a0 Int J Endocrinol. 2016;2016:1427042. doi: 10.1155\/2016\/1427042. Epub 2016 Aug 30. \u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 PMID: 27656207 [PubMed] Free PMC Article<\/p>\n

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.<\/span><\/a> Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, Renaud G, Erlich Y, Willems T, Gallo C, Spence JP, Song YS, Poletti G, Balloux F, van Driem G, de Knijff P, Romero IG, Jha AR, Behar DM, Bravi CM, Capelli C, Hervig T, Moreno-Estrada A, Posukh OL, Balanovska E, Balanovsky O, Karachanak-Yankova S, Sahakyan H, Toncheva D, Yepiskoposyan L, Tyler-Smith C, Xue Y, Abdullah MS, Ruiz-Linares A, Beall CM, Di Rienzo A, Jeong C, Starikovskaya EB, Metspalu E, Parik J, Villems R, Henn BM, Hodoglugil U, Mahley R, Sajantila A, Stamatoyannopoulos G, Wee JT, Khusainova R, Khusnutdinova E, Litvinov S, Ayodo G, Comas D, Hammer MF, Kivisild T, Klitz W, Winkler CA, Labuda D, Bamshad M, Jorde LB, Tishkoff SA, Watkins WS, Metspalu M, Dryomov S, Sukernik R, Singh L, Thangaraj K, P\u00e4\u00e4bo S, Kelso J, Patterson N, Reich D. Nature. 2016 Sep 21. doi: 10.1038\/nature18964. [Epub ahead of print] \u00a0\u00a0\u00a0\u00a0 PMID: 27654912 [PubMed – as supplied by publisher]<\/p>\n

Sensitivity of Next-Generation Sequencing Metagenomic Analysis for Detection of RNA and DNA Viruses in Cerebrospinal Fluid: The Confounding Effect of Background Contamination.<\/span><\/a> Bukowska-O\u015bko I, Perlejewski K, Nakamura S, Motooka D, Stokowy T, Kosi\u0144ska J, Popiel M, P\u0142oski R, Horban A, Lipowski D, Caraballo Cort\u00e9s K, Pawe\u0142czyk A, Demkow U, St\u0119pie\u0144 A, Radkowski M, Laskus T. Adv Exp Med Biol. 2016 Sep 20. [Epub ahead of print] PMID: 27645539 [PubMed – as supplied by publisher]<\/p>\n

Use of probiotics and prebiotics in infant feeding.
\n<\/span><\/a>Bertelsen RJ, Jensen ET, Ringel-Kulka T. Best Pract Res Clin Gastroenterol. 2016 Feb;30(1):39-48. doi: 10.1016\/j.bpg.2016.01.001. Epub 2016 Jan 22. Review. \u00a0 PMID: 27048895 [PubMed – indexed for MEDLINE]<\/p>\n

Co-transplantation of multipotent mesenchymal stromal cells in allogeneic hematopoietic stem cell transplantation: A systematic review and meta-analysis.<\/span><\/a> Kallekleiv M, Larun L, Bruserud \u00d8, Hatfield KJ. \u00a0\u00a0\u00a0\u00a0 Cytotherapy. 2016 Feb;18(2):172-85. doi: 10.1016\/j.jcyt.2015.11.010. Review. \u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 PMID: 26794711 [PubMed – indexed for MEDLINE]<\/p>\n

Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs.<\/span><\/a> Nepal C, Coolen M, Hadzhiev Y, Cussigh D, Mydel P, Steen VM, Carninci P, Andersen JB, Bally-Cuif L, M\u00fcller F, Lenhard B. Nucleic Acids Res. 2016 Apr 20;44(7):3070-81. doi: 10.1093\/nar\/gkv1354. Epub 2015 Dec 15. \u00a0\u00a0\u00a0\u00a0 PMID: 26673698 [PubMed – indexed for MEDLINE] Free PMC Article<\/p>\n

Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.<\/span><\/a> Cheng TH, Thompson D, Painter J, O’Mara T, Gorman M, Martin L, Palles C, Jones A, Buchanan DD, Ko Win A, Hopper J, Jenkins M, Lindor NM, Newcomb PA, Gallinger S, Conti D, Schumacher F, Casey G, Giles GG, Pharoah P, Peto J, Cox A, Swerdlow A, Couch F, Cunningham JM, Goode EL, Winham SJ, Lambrechts D, Fasching P, Burwinkel B, Brenner H, Brauch H, Chang-Claude J, Salvesen HB, Kristensen V, Darabi H, Li J, Liu T, Lindblom A, Hall P, de Polanco ME, Sans M, Carracedo A, Castellvi-Bel S, Rojas-Martinez A, Aguiar Jnr S, Teixeira MR, Dunning AM, Dennis J, Otton G, Proietto T, Holliday E, Attia J, Ashton K, Scott RJ, McEvoy M, Dowdy SC, Fridley BL, Werner HM, Trovik J, Njolstad TS, Tham E, Mints M, Runnebaum I, Hillemanns P, D\u00f6rk T, Amant F, Schrauwen S, Hein A, Beckmann MW, Ekici A, Czene K, Meindl A, Bolla MK, Michailidou K, Tyrer JP, Wang Q, Ahmed S, Healey CS, Shah M, Annibali D, Depreeuw J, Al-Tassan NA, Harris R, Meyer BF, Whiffin N, Hosking FJ, Kinnersley B, Farrington SM, Timofeeva M, Tenesa A, Campbell H, Haile RW, Hodgson S, Carvajal-Carmona L, Cheadle JP, Easton D, Dunlop M, Houlston R, Spurdle A, Tomlinson I. \u00a0\u00a0\u00a0 Sci Rep. 2015 Dec 1;5:17369. doi: 0.1038\/srep17369. PMID: 26621817 [PubMed – indexed for MEDLINE] Free PMC Article<\/p>\n

Increased cytotoxicity and streptolysin O activity in group G streptococcal strains causing invasive tissue infections.<\/span><\/a>\u00a0\u00a0\u00a0\u00a0\u00a0Siemens N, Kittang BR, Chakrakodi B, Oppegaard O, Johansson L, Bruun T, Mylvaganam H; INFECT Study Group, Svensson M, Skrede S, Norrby-Teglund A. Sci Rep. 2015 Nov 25;5:16945. doi: 10.1038\/srep16945.\u00a0 PMID: 26601609 [PubMed – indexed for MEDLINE] Free PMC Article<\/p>\n

The hazard of sharp force injuries: Factors influencing outcome.<\/span><\/a> Kristoffersen S, Normann SA, Morild I, Lilleng PK, Heltne JK. J Forensic Leg Med. 2016 Jan;37:71-7. doi: 10.1016\/j.jflm.2015.10.005. Epub 2015 Nov 5. PMID: 26599374 [PubMed – indexed for MEDLINE]<\/p>\n

Tumor necrosis is an important hallmark of aggressive endometrial cancer and associates with hypoxia, angiogenesis and inflammation responses.<\/span><\/a><\/p>\n

Bredholt G, Mannelqvist M, Stefansson IM, Birkeland E, B\u00f8 TH, \u00d8yan AM, Trovik J, Kalland KH, Jonassen I, Salvesen HB, Wik E, Akslen LA. Oncotarget. 2015 Nov 24;6(37):39676-91. doi: 10.18632\/oncotarget.5344. PMID: 26485755 [PubMed – indexed for MEDLINE] Free PMC Article<\/p>\n

Improving genome annotation of enterotoxigenic Escherichia coli TW10598 by a label-free quantitative MS\/MS approach.<\/span><\/a> Pettersen VK, Steinsland H, Wiker HG. \u00a0\u00a0\u00a0 Proteomics. 2015 Nov;15(22):3826-34. doi: 10.1002\/pmic.201500278. Epub 2015 Oct 7. PMID: 26349841 [PubMed – indexed for MEDLINE][:]<\/p>\n","protected":false},"excerpt":{"rendered":"

[:no]Basert p\u00e5\u00a0siste ukes\u00a0s\u00f8k p\u00e5 \u201cDepartment of Clinical Science AND Bergen\u201d. Hvis du har publikasjoner som ikke favnes av dette s\u00f8ket, send referansen til irene.hjelmaas@uib.no<\/p>\n

Read more →<\/a><\/p>\n","protected":false},"author":2783,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[44,43440],"tags":[],"class_list":["post-10555","post","type-post","status-publish","format-standard","hentry","category-nyheter","category-nye-publikasjoner-i-embase"],"_links":{"self":[{"href":"https:\/\/k2info.w.uib.no\/en\/wp-json\/wp\/v2\/posts\/10555","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/k2info.w.uib.no\/en\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/k2info.w.uib.no\/en\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/k2info.w.uib.no\/en\/wp-json\/wp\/v2\/users\/2783"}],"replies":[{"embeddable":true,"href":"https:\/\/k2info.w.uib.no\/en\/wp-json\/wp\/v2\/comments?post=10555"}],"version-history":[{"count":5,"href":"https:\/\/k2info.w.uib.no\/en\/wp-json\/wp\/v2\/posts\/10555\/revisions"}],"predecessor-version":[{"id":10560,"href":"https:\/\/k2info.w.uib.no\/en\/wp-json\/wp\/v2\/posts\/10555\/revisions\/10560"}],"wp:attachment":[{"href":"https:\/\/k2info.w.uib.no\/en\/wp-json\/wp\/v2\/media?parent=10555"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/k2info.w.uib.no\/en\/wp-json\/wp\/v2\/categories?post=10555"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/k2info.w.uib.no\/en\/wp-json\/wp\/v2\/tags?post=10555"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}